Recently Published
TReND NGS 2015 coursework. Transcriptome assembly quality assessment
This was the presentation made by my students at the TReND NGS 2015 bioinformatics course.
RNAseq quantification method comparison
living document in which I compare RNAseq quantification methods.
Currently:
- eXpress
- Salmon
Transrate contig score initial attempt
Plots exploring the first run of transrate with contig scoring implemented. Run on Trinity-assembled Rice from the SOAPdenovo-trans paper
<em>Gynandropsis gynandra</em> genome true gene/GC exploration
Part of a series of analyses looking at quality control of the Gynandropsis gyanandra genome.
eXpress vs. sailfish
quick comparison of express vs sailfish for RNAseq quantification against flaveria bidentis de-novo transcriptome assembly
Arabidopsis Translatome stats & figures
Summary statistics and figures for the arabidopsis translatome paper.
de-novo transcriptome assembly development report 2
second-stage progress report for transcriptome assembly optimisation