boussau
Boussau
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Optimization can be hard
A little example of how maximization can be difficult for some functions.
Why the scale of a substitution rate matrix matters
Simulations using a non-scaled DNA substitution rate matrix, and then a scaled substitution rate matrix.
Basic masting models
Simple models in R to simulate masting and then perform inference.
Probability that I got infected on March 17 with Covid 19 given that I show no symptom
Some probability computation on the Covid-19 epidemics in France
Huntington's genetics
Investigation of an exam in genetics
Bias-Variance tradeoff
A simple exploration of the bias-variance tradeoff with a linear model
Comparison revbayes, jags, CompoGM
Short comparison of ESS in MCMC chains
Simulating the evolution of a binary trait
A short script to simulate the evolution of a single binary trait on a single branch
MCMC analysis of coin fairness: convergence analysis
Investigating the convergence of MCMC depending on the number of iterations, and the type of move used.
MCMC analysis of coin fairness
A MCMC analysis of 30 coin tosses, with comparison between the posterior and the ML estimates, assessment of the impact of the prior, and computation of a Bayes factor.
Mitochondrial sequence analysis
Exploratory analysis of mitochondrial sequences
Comparison of CCPs
Comparison of CCP distributions obtained using different software and models.
Simulating complete phylogenies
A short example of simulating complete phylogenies, then getting ages of fossil nodes and extant nodes.
Analyse du temps de parole total des candidats à la présidentielle française, du 1er février au 21 avril
Analyse des données téléchargées depuis le site des décodeurs du Monde : http://www.lemonde.fr/les-decodeurs/visuel/2017/05/26/presidentielle-2017-visualisez-80-jours-de-temps-de-parole_5134202_4355770.html