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biomod2 - response plots with ggplot2
Here is quick example to see how you can use ggplot2 to produce fully customizable response plots
Extract presences, absences and pseudo absences
This script is designed to show how you can simply extract presences, absemces and pseudo absences from a data.formatted.Biomod.object object (output of BIOMOD_FormatingData()).
This can be particularly useful to produce custom plots of the modelling data used within biomod2 framework.
biomod2: Use background data for MAXENT
This is a short note to show how and what are the options to select MAXENT background data within biomod2 package.
Install package on luke
How to install a R package on any ciment cluster node
BIOMOD2_Plot_projections
some tricks to produce your own biomod2 projection maps
BIOMOD2_Do_projections_after_a_first_modelling_campain
How to do projections when models have been built in a previous stage.
install R libraies on Froggy and CIMENT Clusters
Some tricks to install a R library having a lot of dependencies in a CIMENT cluster.
BIOMOD2_Note_on_evaluation_of_ensemble-models
Some consideration on the way biomod2 ensemble-models are evaluated
R_parallel_programming_on_froggy
Tutorial to run a 16 core parallel R script on Froggy cluster