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dgeorges

damien georges

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biomod2 - response plots with ggplot2
Here is quick example to see how you can use ggplot2 to produce fully customizable response plots
biomod2: Plor roc curves
Extract presences, absences and pseudo absences
This script is designed to show how you can simply extract presences, absemces and pseudo absences from a data.formatted.Biomod.object object (output of BIOMOD_FormatingData()). This can be particularly useful to produce custom plots of the modelling data used within biomod2 framework.
biomod2: Use background data for MAXENT
This is a short note to show how and what are the options to select MAXENT background data within biomod2 package.
Install package on luke
How to install a R package on any ciment cluster node
BIOMOD2_Plot_projections
some tricks to produce your own biomod2 projection maps
BIOMOD2_Do_projections_after_a_first_modelling_campain
How to do projections when models have been built in a previous stage.
install R libraies on Froggy and CIMENT Clusters
Some tricks to install a R library having a lot of dependencies in a CIMENT cluster.
BIOMOD2_Note_on_evaluation_of_ensemble-models
Some consideration on the way biomod2 ensemble-models are evaluated
R_parallel_programming_on_froggy
Tutorial to run a 16 core parallel R script on Froggy cluster