HIP & HOP combined First 14 compounds

mtx dox ndma nbma ndea ma 2 gilead compounds new pool

male Rat anaesthesia low and high QC report

QC of all barsesq matrixes newly available '/home/common/barseq_output'

jul27_NASA_metformin.Rmd

GNI transfer of barcode analysis

first try at transferring analysis to GNI for barseq using simple example

mauricsio

mauricio_barcode_oct9.Rmd

mauricio_barcode_oct2.Rmd barseq_functions.R

0909_figS2_SC.Rmd

081916_inhibition_correction.Rmd adopted from AYL function medShift.strainCts only includes positive correlations

aug13_bkgrnd_cutoff_batchSC.Rmd

080116_bkgrnd_calls_final_YPD.Rmd same as SC but criteria = posteriour > 0.5 in ALL ctrls

080116_bkgrnd_calls_final_SC.Rmd batch_corrected synthetic dropout with mixEM

batch corrected threshold criteria -- at least half of experiments have to have a posterior > 0.5

enforcing cutoff of > 0.5 for all 3 ctrl conditions for each pool i

visualizing categorical and continuous variables rpivot table