More examples using igraph and Cytoscape. Data integration is done in R and the entire visualization process is automated.
Basic workflow using R, igraph, and Cytoscape. This is a toy example to visualize shortest path in Cytoscape
Overview of cyREST basic features.
Part 3 of introduction: Understanding Visual Style in Cytoscape.
more details about how to use Cytoscape with igraph.
Basic workflow to lean how to use Cytoscape REST API from R.