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SAS - FPKMs - Reds
SAS - FPKMs - Blues
Hydrops - Angio
Jessica 1
DEG - Pat
DEG - Mat - Perg
K mean cluster
Scatter plot - All 1
Scatter plot - All
Scatter plot - Groups
Monoallelic-Pat-GroupA
Monoallelic-Mat-GroupA
Monoallelic-Mat-GroupD
Monoallelic-Pat-GroupD
Monoallelic-Pat-GroupC
Monoallelic-Mat-GroupC
Monoallelic-Mat-GroupB
Monoallelic-Pat-GroupB
Figure 4.A
Figure 2-BMC Genomic
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Figure 4.D
Figure 4.C
Figure 2.
GENOTYPECXCL16-DENDOGRAM
FIG 11. A.
Differential gene expression and weighted gene co-expression network analysis in stallions homozygous and heterozygous for the CXCL16S allele (CXCL16S/CXCL16S and CXCL16S/CXCL16R; n=5). (A) A total of 542 genes were differentially expressed between animals exhibiting different genotype (i.e. between stallions carrying the susceptibility allele [CXCL16S, n=5] and those who did not [homozygous for CXCL16R, n=4]) and following EAV infection. A lower proportion (188 genes) were upregulated in stallions carrying the CXCL16S allele.
FIG 3. B. Transcription Factors
Representative heatmaps showing perturbation in the gene expression of several transcription factors
FiG 3. B. Apoptosis
Representative heatmaps showing changes in gene expression levels during long and short-term viral persistence. DEGs (n=390) were classified based on their Gene Ontology (GO) terms and selected categories are depicted. Differential gene expression analysis revealed a significant upregulation of genes involved in apoptosis
FiG 3. B. Adhesion
Representative heatmaps showing changes in gene expression levels during long and short-term viral persistence. DEGs (n=390) were classified based on their Gene Ontology (GO) terms and selected categories are depicted. Differential gene expression analysis revealed a significant upregulation of genes involved in adhesion
FiG 3. B. Chemotaxis
Representative heatmaps showing changes in gene expression levels during long and short-term viral persistence. DEGs (n=390) were classified based on their Gene Ontology (GO) terms and selected categories are depicted. Differential gene expression analysis revealed a significant upregulation of genes involved in chemotaxis
FIG 3. B. Adaptive Immune Responses
Representative heatmaps showing changes in gene expression levels during long and short-term viral persistence. DEGs (n=390) were classified based on their Gene Ontology (GO) terms and selected categories are depicted. Differential gene expression analysis revealed a significant upregulation of genes involved in adaptive immune responses
FIG 3. B. Responses to Viral Infection
Representative heatmaps showing changes in gene expression levels during long and short-term viral persistence. DEGs (n=390) were classified based on their Gene Ontology (GO) terms and selected categories are depicted. Differential gene expression analysis revealed a significant upregulation of genes involved in responses to virus infection
FIG 3. B. Innate Immune Responses
Representative heatmaps showing changes in gene expression levels during long and short-term viral persistence. DEGs (n=390) were classified based on their Gene Ontology (GO) terms and selected categories are depicted. Differential gene expression analysis revealed a significant upregulation of genes involved in innate immune responses
FIG 3. A
Heatmap depicting the expression pattern of the differentially expressed genes (DEGs) between long-term and short-term carrier stallions (n=390 genes). The majority of the DEGs between these two groups were upregulated.
Transcription Factors
Apoptosis
adhesion
hemo-MAC
adapt-MAC-row
es2Vir_MAC
-innate_MAC
DEGs
HTML
HTML
Red
qPCR
MCA_-DCT
FIgure_1
Figure_1
SS-SR-RR-Gene_NAMe
SS-SR-RR
SS-SR-RR
Trans-fac_MAC-row
Prol_MAC-row
Angio-MAC-row
app-MAC_row
adhi-MAC-row
Chemo-MAC-row
adapt-MAC-row
res2Vir_MAC-row
innate_MAC-row
Immune res_MAC-row
all-MAC-Row
all-MCA
Figure 4.B
miRNA-Angio
Figure 3.A
CAM-Targets
C24MC
-DCT
HTML
eca-miR-412
eca-miR-411
eca-mir-409
eca-miR-379
eca-miR-134
eca-miR-127
ISH-Score
VolcanoPlot- target mRNA-geneName
VolcanoPlot- target mRNA-geneName 34Day whole embryo-2 Postpartum placenta
VolcanoPlot- target mRNA
34Day whole embryo-2 Postpartum placenta
C14MC, CAM, -DCT -A
Dendrogram none
C14MC, CAM, -DCT -B
Dendrogram row
C14MC, CAM, -DCT -C
Dendrogram Both
HTML
CAM - Normalized Read Count -