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rcaloger

Raffaele Calogero

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Demonstrative workflows
RNAseq, miRNAseq and ChIPseq workflows are described
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skeleton tutorial
A brief tutorial for the skeleton structure to be used by developers of reproducible-bioinformatics project
RNAseq workflow
miRNAseq workflow
ChIPseq workflow
SeqBox ecosystem
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casc vignette
casc is a tool for single-cell data analysis
casc vignette
An Introduction to docker4seq package
The docker4seq package was developed to facilitate the use of computing demanding applications in the field of NGS data analysis. The docker4seq package uses docker containers that embed demanding computing tasks, e.g. short reads mapping. This approach provides multiple advantages: i. user does not need to install all the software on its local server ii. results generated by different containers can be organized in pipelines iii. reproducible research is guarantee by the possibility of sharing the docker containers used for the analysis
An Introduction to docker4seq package
The docker4seq package was developed to facilitate the use of computing demanding applications in NGS data analysis. The docker4seq package uses docker containers that embed demanding computing tasks, e.g. short reads mapping. This approach provides multiple advantages: i. user does not need to install all the software on its local server, ii. results generated by different containers can be organized in pipelines, iii. reproducible research is guarantee by the possibility of sharing the docker containers used for the analysis.