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seandavi

Sean Davis

Recently Published

NCI Cleversafe Analysis
Tech Dev of SCRNA-seq
small example dataset from Cellular Research
NCI-60 Exome Data for Predicting Drug Response
Eric Polley (NCI) put together a small dataset that uses the NCI-60 DNA variants (collapsed to gene) to predict drug response.
Kale for Lisa
A dataframe manipulation example
Using R system() functionality for orchestrating a small parallel bioinformatics workflow
In this vignette, I use the SRA SDK, the Kallisto RNA-seq software, BiocParallel, and R system() calls to orchestrate a small bioinformatics workflow.
NCBI GEO Metadata Survey
Parallel computing with the <em>parallel</em> R package
This is a simple application of the R parallel package.