small example dataset from Cellular Research
Eric Polley (NCI) put together a small dataset that uses the NCI-60 DNA variants (collapsed to gene) to predict drug response.
A dataframe manipulation example
In this vignette, I use the SRA SDK, the Kallisto RNA-seq software, BiocParallel, and R system() calls to orchestrate a small bioinformatics workflow.
This is a simple application of the R parallel package.