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NadineBestard

Nadine

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DE_oligo3_vold_jpriller
colour palette
DE WTKO clusters vold jpriller
de opc1vs2 jpriller vold
vold DE oligo
DA_miloR_vold_jpriller
clustering 02 vold
annotation_02_vold_jpriller
index_jpriller
QC_02vold
pseudotimeoligos
DE KO, HET, WT young
clusterQC old jpriller
Clustering 1 vold
normalise 01 vold (jpriller
feature selection 01 vold (jpriller
QC_01 filtered vold (jpriller)
QC_discard_vold
QC_01vold (jpriller)
DA miloR young (jpriller)
Document
BAMs Hetvsko
clusterQC young (jpriller)
index jpriller
CellRanger QC (jpriller)
DA barplots young (jpriller)
Annotation 02 young (jpriller)
Annotation 02 young (0.2) (jpriller)
Clustering 02 young (jpriller)
index_2
why is not the same as before?
first.step(worklowr)
From QC to batch correct 2- young (jpriller)
annotation 01 young (jpriller)
Clustering 01 young (jpriller)
Normalisation young (jpriller)
miloR oligo old (jpriller)
Workshop RNAseq
DA miloR old (jpriller)
Subsetting oligos (jpriller)
Differential abundance of cells between KO-WT oligo clusters (VM)
Differential expression WTvsKO - per cluster (VM)
Differential expression WTvsKO - edgeR (VM)
annotation (VM)
Clustering oligos (VM)
Subsetting oligos
Batch correction (VM)
Normalisation by deconvolution (VM)
First QC (VM)
Veronique miron index
Batch correction (young-jpriller)
Cell and gene QC (young-jpriller)
Cell cycle (jpriller)
Differential expression between KO-WT cell types (jpriller)
Differential expression WTvsKO (jpriller)
Differential abundance of cells between KO-WT clusters (jpriller)
Differential expression WTvsKO (jpriller)
clustering 2 (jpriller)
annotation 2 (jpriller)
Cluster QC (jpriller)
First annotation (jpriller)
First clustering (jpriller)
feature selection and dimensioal reduction ( jpriller )
Normalisation (jpriller)
Cell and gene QC (jpriller)
Differential expression HCA-Dev
Integration embryos adults
Differential expression
Annotation
Sex-Age-Tissue differences
HCA all celltypes INDEX
Document
Cluster QC 2
Cluster QC
Integrate adults with embryos
Compare rodents with HCA
README - Compare young-old DE from rat and mouse
Compare young-old DE from rat and mouse
Rat differential expression
Compare published young-old DE from rat and mouse