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Sri_Upasna

UPASNA SRIVASTAVA

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Docume62
Document61
Modules.boxplot.Scater
Document56
Document
Module.Geneset.detection.between.two.datasets
PDAD
PD.Proteomics
Boxplot script based on groups
Document1
Human.Microgliabin
Variation.Partition.Analysis.using.Batch.correction
Late.pd.reanalysis
Early.pd
Volcano.plot and GO.KEGGPathway.script.Proteomics
Concordant.Discordant.heatmap
Final.boxplot.wgcna.camk2a
WGCNA.module.trait.boxplot
GSVA.Concordance.Discordant
Document
CellChat.for.Cell.cell.contact.DB
brain.analysis
Bulk.analysis
CellChat.analysis
Script for Downloading of GEO datasets
CellChat.version2.Pipeline for cell-cell communication in snRNAseq
this tutorial is based on updated version of CellChat v2
Analyzing of MaxQuant output results
remove-duplicated-rows-irrespective-of-column
Variation Partition analysis
Variation Partition analysis
GO analysis
Concordance.Scater.plot.snRNAseq
this is based on concordanct and discordant analysis
Proteomics pipeline
GSEA plots script
convert ENTREZID to ENSEMBL in R
R script to create an igraph plot for the miRNA-target interactions
Microbiome Differential Abundance Testing Tutorial
Running DESeq2
calculate the correlation between miRs
Monocle3 script
GSEA plot using DESeq2
GO enrichment analysis using DSeq2
pseudo-bulk analysis script
DESeq2 clustering heatmap script
DESeq2 script
Script for variant calling
Compute the CLR transformation
script to join multiple csv file which have different rows length can be join by columns
To read and bind multiple text files from a directory in R
script for DEG heatmap across celltype
DEG up and Down bar plot scripts
Alluvial-barplot-heatmap plot scripts from seurat objects
basics for monocle and seurat based plots
Identifying cluster biomarkers in Seurat
multiple featuresPlot for seurat object
AUC analysis for seurat object
script for subset a CSV file based on different groups in a column and save the subsets as separate CSV files
script for subset a CSV file based on different groups in a column and save the subsets as separate CSV files
R script for merged data using multiple CSV files
this script is useful when you want to merge many DEG results
test
test only