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ZID8

Zi Han Ding

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Final Report for Final Project BIOSC 1540
This is the final report for the final project for BIOSC 1540. The document was created using the template given by the professor Nathan Brouwer. It contains the data analysis and the conclusion drawn from the PCA of the 1000 genomes project SNP data.
BIOSC 1540 Full Workflow Final Project
The full workflow part of the final project. Completed according to the pdf given and slightly modified code.
Data Analysis with PCA
Data Preparation Script HW
ImputationHW
NARemovalHW
PCA Analysis Study HW
In Class Exercise FST
vcfRHW2
vcfTestHomework
Working Dir Practice
Vegan Package and PCA homework
VCF Assignment BIOSC 1540
BIOSC 1540 Homework PCA ZID8
Analysis of amino acids using PCA and producing graphical representations. Added functions and removed syntax errors. Had problems with knit, needed to change knit directory.
tempDoc
Temporary R markdown made for class and testing