abarghi
Amir Barghi
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A Tidyverse Approach to Alpha, Beta and Gamma Diversities
Alpha, beta and gamma diversities are computed and visualized using formulas and using the package vegetarian. The document uses the data set vegetarian::simesants. For the formulas used in this document, see the following articles: - L. Jost, “Entropy and diversity”, Oikos, vol. 113, pp. 363–375, Jan. 2006. - L. Jost, “Partitioning diversity into independent alpha and beta components”, Ecology, vol. 88, pp. 2427–2439, Oct. 2008.
Chap. 5: The Barabasi-Albert Model
Examples for Teaching from Network Science, by Albert-Laszlo Barabasi, Cambridge University Press, 2016
Fly (Drosophila Medulla) Connectome Network
Examples for Teaching from Network Science, by Albert-Laszlo Barabasi, Cambridge University Press, 2016
Yeast Protein Interaction Network
Examples for Teaching from Network Science, by Albert-Laszlo Barabasi, Cambridge University Press, 2016
Chap. 4: The Scale Free Property
Examples for Teaching from Network Science, by Albert-Laszlo Barabasi, Cambridge University Press, 2016
Chap. 3: Random Networks -- Small Worlds
Examples for Teaching from Network Science, by Albert-Laszlo Barabasi, Cambridge University Press, 2016
Chap. 3: Random Networks -- Erdos-Renyi
Examples for Teaching from Network Science, by Albert-Laszlo Barabasi, Cambridge University Press, 2016