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ExtendedFigure8c
Integrate log2FC vs. gScramble and edge weights outputted from Taiji to calculate heuristic scores representing TF-gene regulatory strength and directionality
Figure 4f
Calculate module scores for Armstrong and Clone 13 LCMV knockout scRNA-seq data for TRM_Up and TRM_Down signatures
Figure3i
Calculate module scores of LCMV clone 13 KO scRNA-seq data for TExTerm, TExEff, TE, Ca, TExProg, and Naive signature groups
Figure2h
GSEA of GO terms (intersected w/TF communities) in the Pan Cancer scRNA-seq and LCMV RNA-seq datasets