dingyanqian
Yanqian Ding
Recently Published
ATC-F3
ATC exclude those weird clusters
ATANP-TAXA
PCA results according to the taxa, divided into 6 levels: diploid taxa; diploid hybrids; tetraploid taxa; tetraploid hybrids; across ploidy hybrids; not sure
ATANP-F range
DATASET: ATANP; divided by inbreeding coefficient; three levels:
1. (0, 0.5): small
2. (0.5, 0.8): middle
3. [0.8, 1): large
ATANEW-F RANGE
DATASET: ATANEW; divided by inbreeding coefficient; three levels:
1. (0, 0.5): small
2. (0.5, 0.8): middle
3. [0.8, 1): large
ATANEW-TAXA
PCA results according to the taxa, divided into 6 levels: diploid taxa; diploid hybrids; tetraploid taxa; tetraploid hybrids; across ploidy hybrids; not sure
ATANEW
1. separate dip and tet from ATA dataset;
2. Set filter MAF =0.05 for each sub-dataset;
3. Merge them again;
4. Make PCA plot
ATANP-PLATE
PCA result of ATANP datasets with plate and lane annotation
