drh85
David Hall
Recently Published
PON2 protein analysis across 10 species
Analysis of paraoxonase 2 across 10 different species. This analysis includes: protein feature information, secondary structure prediction, dot plot analysis, PID tables, an MSA, a distance matrix, and a predicted phylogenetic tree.
Predicting amino acid properties using regression
An assignment for Computational Biology at the University of Pittsburgh.
ggplot2 and ggpubr test
testing ggplot2 and ggpubr for class on 11/18/21 for Computational Biology at the University of Pittsburgh
Review of Downloading, Cleaning, and Working with Data
A review for an exam in Computational Biology at the University of Pittsburgh.
R and Needle Alignments with the PON2 protein in Homo sapiens and Mus musculus species
An assignment for Computational Biology at the University of Pittsburgh to compare R and Needle Alignments for a given gene.
Accessing Google Sheets in R code by Nathan Brouwer
An exercise for Computational Biology at the University of Pittsburgh to make sure there are no errors and we can work on other exercises.
Pracitce Making Pie Charts
An assignment for Computational Biology at the University of Pittsburgh
Using R to investigate gene PON2 for sequence repeats
An assignment from Computational Biology at the University of Pittsburgh
Investigating Shroom for the presence of repeats
An assignment from Computational Biology at the University of Pittsburgh
Using dotplots in R to investigate sequence repeats
An assignment from Computational Biology at the University of Pittsburgh
Introduction to dotplots in R
An assignment from Computational Biology at the University of Pittsburgh
Downloading a FASTA file exercise
An exercise to download a FASTA file, which was modified to also download a FASTA file for the PON2 gene in humans.
Working Directory Test
Testing with getting and setting working directories
MSA Creation Workflow
A workflow of creating an MSA using NCBI Shroom sequence data