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efrank801

Ethan Frank

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Final Project Report
Final Project Workflow
In-class Exercise: Studying Natural Selection with SNPs
Worked Example: PCA on SNPs data from a vcf file Part 2 - Data Analysis
Worked Example: PCA on SNPs data from a vcf file Part 1 - Data Preparation
Portfolio: Working with VCF files 4: Imputation of missing data
Portfolio: Working with VCF files 3: Removing samples with many NAs
Portfolio: PCA Analysis Case Study - Bird Species Morphology
Portfolio: Working with VCF files 2: Removing invariant columns
Portfolio: Working with SNP files 1 - loading and transposing VCF files
Software Checkpoint: Setting a working directory and loading data
Software Checkpoint: vcfR
RPubs Portfolio: Under the hood of PCA
Software Checkpoint: RPubs