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eraz0001

Ehsan Razmara

Recently Published

improved dotplot
slingshot gene expression
intercellDB
Not recommended. Instead, Cellchat and cellphoneDB are advised!
venn graph
radar_plot
raceid
volcano_seurat
heatmap enhancement
sc-type on seurat PBMC
seurat stacked vlnplot
cell cycle regression
Liger
Seurat obj batch effect elimination
Herein, we used FastMNN algorithm of Seurat pckg to cut down on the "Batch effects" generated by type of "Group."
GSEA Kelly 2020 Hindlimb
E11.5 Kelly et al. Hindlimb data (SingleR)
Automatically cell clustering
NichenetR, Kelly et al. E11.5, hindlimb
I used data by Kelly et al. E11.5 of hindlimb dev. to determine which ligand-receptor is downregulated or upregulated.
Monocle 3 performed on Kelly et al. E11.5 data
Data were analyzed using Monocle 3.0 pkg on E11.5 scRNA-seq provided by Kelly. et al