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intercellDB
Not recommended. Instead, Cellchat and cellphoneDB are advised!
Seurat obj batch effect elimination
Herein, we used FastMNN algorithm of Seurat pckg to cut down on the "Batch effects" generated by type of "Group."
E11.5 Kelly et al. Hindlimb data (SingleR)
Automatically cell clustering
NichenetR, Kelly et al. E11.5, hindlimb
I used data by Kelly et al. E11.5 of hindlimb dev. to determine which ligand-receptor is downregulated or upregulated.
Monocle 3 performed on Kelly et al. E11.5 data
Data were analyzed using Monocle 3.0 pkg on E11.5 scRNA-seq provided by Kelly. et al