Recently Published
20190803_Gilead_GOenrichments
HIP & HOP combined
First 14 compounds
Apr26_2019_fitness_plots_barseq_DESeq2ment
mtx dox
ndma nbma ndea ma
2 gilead compounds
new pool
maleRat
male Rat anaesthesia low and high QC report
Feb10_QC_barseq
QC of all barsesq matrixes newly available '/home/common/barseq_output'
NASA_metformin
jul27_NASA_metformin.Rmd
feb11_2017
GNI transfer of barcode analysis
GNI_barseq_analysis_gg
first try at transferring analysis to GNI for barseq using simple example
tome_oct9_barseq_vs_chip
mauricsio
barseq_individual experiments
mauricio_barcode_oct9.Rmd
barseq_edgeR_vs_DESeq2
mauricio_barcode_oct2.Rmd
barseq_functions.R
final_summary_SC_plots
0909_figS2_SC.Rmd
inhibition_correction
081916_inhibition_correction.Rmd
adopted from AYL function medShift.strainCts
only includes positive correlations
aug13final_sc_cutoff
aug13_bkgrnd_cutoff_batchSC.Rmd
mixEM_YPD
080116_bkgrnd_calls_final_YPD.Rmd
same as SC but criteria = posteriour > 0.5 in ALL ctrls
aug1_sc_background
080116_bkgrnd_calls_final_SC.Rmd
batch_corrected synthetic dropout with mixEM
SC mixEM
batch corrected
threshold criteria -- at least half of experiments have to have a posterior > 0.5
SC_mixEM
enforcing cutoff of > 0.5 for all 3 ctrl conditions for each pool
i
dose_response
visualizing categorical and continuous variables rpivot table