This R Markdown document computes the RR cutoff level by using formula from Schield (2014), "Relative Risk Cutoffs for Statistical Significance".

This document helps the user build data frames in R by scratch.

The data used in the 5 x 5 and 3 x 3 matrix comes from a MSA of different chimpanzee subspecies. In the 5 x 5 matrix, the values being used to compute the trees are the Percent Identical (PID). The PID values came from 10 selected dimorphic loci in the MSA. In order to calculate the specific PID values we needed to compare the 10 selected dimorphic loci on the 5 subspecies with each species. A total of 10 PID were generated. We calculated the PID based on the alleles that were similar within in each subspecies. Using the PID values we will then construct a dissimilarity matrix and use the packages ape and phangorn to help construct different trees.

We are analyzing bear populations in Yellowstone, to simulate if the critical population will be able to survive.

This is just a test to publish an R markdown to the web.