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liziqi961

Ziqi Li

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Final project workflow
Comp Bio Final Report
in class studying natural selection
Worked Example: PCA on SNPs data from a vcf file Part 2 - Data Analysis
Worked Example: PCA on SNPs data from a vcf file Part 1 - Data Preparation
Portfolio: PCA Analysis Case Study - Bird Species Morphology
Portfolio: Working with VCF files 4: Imputation of missing data
Portfolio: Working with VCF files 3: Removing samples with many NAs
Portfolio: Working with VCF files 2: Removing invariant columns
working with snp file
Software Checkpoint - Setting a working directory and loading data
Software Checkpoint: vcfR (Due first Monday after break)
RPubs Portfolio: the vegan package and PCA
RPubs Portfolio
Document