mad206
Matthew Dixon
Recently Published
EPIONCHO-IBM morbidity vignette
HTML version of the vignette for the morbidity module within the onchocerciasis transmission model (EPIONCHO-IBM), with all code chunks executed.
HISTONCHO examples in R notebook
Worked examples of loading in HISTONCHO from Zenodo, processing the dataframe and working with variables to generate visualizations (maps and frequency plots). We present examples with the co-endemicity and treatment status in 2022 variables from HISTONCHO.
Modelling interventions in the age-structured EPICYST model
Modelling age stratified (and non age-stratified) interventions in the age-structured T. solium transmission model, EPICYST.
Modelling complex interventions in the age-structured EPICYST model
A guide to modelling complex multistage (and age stratified) interventions in the age-structured T. solium transmission model, EPICYST.
Age structured EPICYST introduction
Providing details on using the age-structured version of the deterministic T. solium transmission model, EPICYST.
Running the OAE vignette in EPIONCHO-IBM
Demos for running onchocerciasis associated epilepsy (OAE) module in EPIONCHO-IBM at baseline (endemic equilibrium), through an annual MDA programme and through a biannual MDA programme.
Installing and Running EPIONCHO-IBM
A vignette detailing installation steps, running and visualizing EPIONCH-IBM to equilibrium and running interventions (with equilibrium inputs).