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madisondougherty

Madison Dougherty

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Workflow: Data Preparation
Final Report: Analysis of 1000 Genomes Data with PCA
Worked Example: PCA on SNPs data from a vcf file Part 2 - Data Analysis
In Class: Studying Natural Selection with SNPs
Worked Example: PCA on SNPs data from a vcf file Part 1 - Data Preparation
Portfolio: PCA Analysis Case Study - Bird Species Morphology
Portfolio: Working with VCF files 4: Imputation of missing data
Portfolio: Working with VCF files 3: Removing samples with many NAs using for loops
Portfolio: Working with VCF files 2: Removing invariant columns
Portfolio: Working with SNP files 1 - loading and transposing VCF files
Software Checkpoint - Setting a working directory and loading data
Software Checkpoint: vcfR
Portfolio: Under the hood of PCA
Portfolio: The Vegan Package and PCA
Test (Checkpoint)