mramos
Marcel Ramos
Recently Published
RaggedExperiment Demos (vjcitn)
Demos produced by Vincent Carey
Profile of `mean(assay(loom) == 0)`
Visual profiling (profvis)
cBioPortalData: Quick Start
Quick Start Vignette for exploring the cBioPortal API
curatedTCGAWorkshop
Bioconductor NYC Meetup
curatedTCGAData vs Remote HDF5
A comparison of the LIHC dataset using different technologies and pipelines
CurrentSitPregFeel
Table
RFP
Basic demographic tables
Descriptives
Descriptive Stats on Pregnancy Intentions Data
Code for improving names helper function
Handles multiple matches in suffix and prefix by returning first match
Online Learning Websites
A short list of online learning websites.
Using gistr in R
Short Tutorial on using the package "gistr" for sharing bits of code
Gantt Chart in R
Create your very own Gantt Chart for your project by following this R code!
IFtoR
Send web notifications to your mobile device using R
NetCDF Tutorial
The "ncdf" package allows for easy implementation of fast read in of flat files from remote servers. Similar to the HDF5 file system, the NetCDF format is good for storing and retrieving genomic data. One drawback of this format system is the lack of hierarchy that is present in HDF5 implementations.
RTCGAToolbox Short Tutorial
Downloading data from the TCGA pipeline via RTCGAToolbox Bioconductor package
Ozymandias Clone/Load
Clone the Ozymandias repository from GitHub and load the necessary data and R scripts!
Principal Components Analysis Options
An introduction to the number of options available for performing Principal Components Analysis.