## Recently Published

##### UMAP of T cells without other PBMC cells using clusters and PC-1:20

UMAP of T cells without other
PBMC cells using clusters and PC-1:20

##### L1_Merged_first_HPC_PC-1:21-6-old_script

L1_Merged_first_HPC_PC-1:21-6-old_script

##### L1_Merged_first_HPC_PC-1:50-5

L1_Merged_first_HPC_PC-1:50-5

##### L1_Merged_first_HPC_PC-1:50-4

L1_Merged_first_HPC_PC-1:50-4

##### L1_Merged_first_HPC_PC-1:50-3

L1_Merged_first_HPC_PC-1:50-3

##### UMAP of T cells-PC-1:50-2

Old Script used

##### Just T cells Analysis_PC-1:50

UMAP of T cells without other PBMC cells using clusters and PC-1:50

##### L7

Cell Line L7 Analysis

##### L6

Cell Line L6 Analysis

##### L5

Cell Line L5 Analysis

##### L3

Cell Line L3 Analysis

##### L4

Cell Line L4 Analysis

##### L4_notebook

Cell Line L4 Analysis

##### L3_Notebook

Cell Line L3 Analysis

##### L2_Notebook

Cell Line L2 Analysis

##### L2

Cell Line L2 Analysis

##### L1_notebook

Cell Line L1 Analysis

##### L1

Cell Line L1 Analysis

##### cell-cell communication using CellChat

Inference and analysis of cell-cell communication using CellChat

##### Document-Harmony-Integration

1:13
0.1-1.2

##### Integration by Harmony_on_SCTransform_DATA

Same parameters
Without findNeigbors and FindClusters

##### 1-Harmony Integration_on_SCTransform

Its done on SCTransform data with 1:13 PCA
0.5 Res

##### Integration by Harmony_by_K_1-50

1:50
0.5

##### Integration by Harmony_by_K

1;20
0.5

##### Integration by CCA_by_K_1-12

used K code 1:20 log Norm 1:12 integration

##### Integration by CCA_by_K_1-20

used K code 1:20 log Norm 1:20 integration

##### Integration by CCA_by_K

used K code
1:20 log Norm
1:50 integration

##### CCA_harmony_0.5

dims: 1:15

##### Resolution Test

0.3-2

##### Document

Escape Visualization

##### Document

Analysis of TCR-SS