rossibarra
Jeffrey Ross-Ibarra
Recently Published
Two Teos Admixture
A small set of ~80K SNPs, so will need to be redone.
Age plot
random megabase
partial recessives
inbreeding depression and partial recessive
Document
SFS of a dispensable gene, from Baumdicker 2014 (http://dx.doi.org/10.1016/j.tpb.2014.12.001)
euodDH sims
Simulating (badly) some DHs to see patterns of mean and ancestral frequency
Ab10_easy
Simple ab10 frequency demonstrating drive and my ability to do something super simple in shiny
MLE estimate
estimating alpha
forLauren
admix_graphs
silhouette
silhouette scores and admixture
Tajd-diversity
Tajima's D does not correlate with diversity
tajd-diversity
Tajima's D does not measure diversity.
interference
Do we expect an autocorrelation between chiasma number and estimates of interference?
ParCors
partial correlations for Tim
self_imputation
Impute mom using selfed progeny only.
selfing sucks
ML estimation of kid's genotype from selfed mom
fwdpp_sims
first real stab at linked sims in fwdpp.
mutation for highlow
Calculations of mutation rate and time
mctwos
bad phasing method, two loci at a time
Genome Size Read Alignments
See https://github.com/rossibarra/gsize for details
