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shantanu

Shantanu

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Distribution of random Average Precision and Precision@R
Null threshold for Precision@R and mAP
Percent matching depends on number of replicates
Multiclass random baseline
Deconstructing percent replicating
Percent replicating reports the fraction of tests that pass significance at a specified level
Supplementary Figure S7
Percent Replicating
Explain Grit
Pairwise similarities and distances
Splitting LINCS data into train and test based on MOA information
Pearson similarity and distance from control
Cross-correlations and Pearson similarities
Pearson similarity and Cosine distance
Evaluation with unbalanced classes
LDA vs difference vector
Inspect CellProfiler features
Analyzing annotations in the Broad Drug Repurposing collection
Experiments with whitening
CytoData 2018 - Day 2
Overview of dataset
Reproduce figures from Caicedo et al. 2017
svdentropy
SVD entropy
CellProfiler 2.2.1 vs skopy timing on BBBC021
CellProfiler timing
BBBC021 processing
Predict compounds mechanism-of-action by morphological profiling - skopy edition
Predict compounds mechanism-of-action by morphological profiling
This vignette demonstrates predicting compound mechanism-of-action using morphological profiling data. The data is “cleaned up” using the similarity network fusion algorithm (SNF). This vignette bases on the vignette predict_moa. See the vignette single_cell_analysis for details about this dataset.
cytominer_demo
Feature distribution analysis
Replicate correlation v Signal Strength
CLUE
Analyze single-cell data
View cell images
Predict compounds mechanism-of-action by morphological profiling