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victoryi

Victor Yi

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Final Report
Final Project
Worked Example: PCA on SNPs data from a vcf file Part 2 - Data Analysis
Worked Example: PCA on SNPs data from a vcf file Part 1 - Data Preparation
Software Checkpoint: vcfR
Software Checkpoint - Setting a working directory and loading data
RPubs Portfolio: the vegan package and PCA
Portfolio: Working with VCF files 4: Imputation of missing data
Portfolio: Working with VCF files 3: Removing samples with many NAs
Portfolio: Working with VCF files 2: Removing invariant columns
Portfolio: Working with SNP files 1 - loading and transposing VCF files [updated]
Portfolio: PCA Analysis Case Study - Bird Species Morphology
Plot
Under the hood of PCA
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