gravatar

vinishasant

Vinisha Sant

Recently Published

Final Report
Final Report for BIOSC 1540. PCA Analysis on SNP data from 1000 Genomes Project.
Final Project Workflow
Final Project Workflow for BIOSC 1540, Fall 2022. Setting up and cleaning SNP data for analysis.
Worked Example: PCA on SNPs data from a vcf file - Data Analysis
Worked Example: PCA on SNPs data from a vcf file - Data Preparation
PCA Analysis Case Study - Bird Species Morphology
Working with VCF files 4: Imputation of missing data
Working with VCF files 3: Removing samples with many NAs Using for loops
Studying Natural Selection with SNPs
Removing Fixed Alleles from SNP Data
Preparing VCF Data for Analysis: Transposition
Setting a Working Directory in R
Testing vcfR
The vegan package and PCA
Under the Hood of PCA
Test