Recently Published
GAM results
Mammal GAM for predictors of species richness TFs
futuRe possibilities
Slide set for Tuesday sessions
nbn_atlas api
rapid run through of extracting nbn atlas data via the API in R
Desert tortoises
Using behaviour ecology to deter predation of Agassiz's desert tortoise by ravens in the Mojave desert
Rewilding
One years worth of Guardian articles about rewilding
JNCC designations
Abstract
This collection of files details the conservation designations of over 13,000 UK "taxa" that have been assigned some form of rarity, threat or legal status in Great Britain or the UK. It is a collation of many different "designation" lists including country-specific lists, and lists produced by national and International conventions or directives.
The collection of files contains an Excel workbook, a guidance document detailing how to use the spreadsheet, and a document detailing the constituents lists included in the spreadsheet. These resources are available to download either separately or as a zipped file.
The following designation types are included in the spreadsheet:
Bern Convention (Appendices 1, 2 and 3);
Bonn Convention – Convention on the Conservation of Migratory Species (Appendices 1 and 2, AEWA, ASCOBANS, EUROBATS);
Biodiversity Action Plan (BAP) UK priority species list;
Birds Directive (Annexes 1, 2.1 and 2.2);
Birds of Conservation Concern (Red/Amber list and not based on IUCN criteria);
Convention on Migratory Species;
EC CITES (Annexes A, B, C and D);
Global Red list status (this includes red listings based on pre-1994, 1994 and 2001 IUCN guidelines);
Habitats Directive (Annexes 2, 4 and 5);
Nationally Rare/Scarce (not based on IUCN criteria);
Nationally Scarce and Nationally Rare Species (also with an IUCN status);
National Red Lists (this includes red listings based on pre-1994, 1994 and 2001 IUCN guidelines);
OSPAR;
Protection of Badgers Act 1992;
Species of principal importance in England, Scotland, Wales and North Ireland (NERC section 41 and 42 lists, Scottish Biodiversity List and Northern Ireland Priority Species List);
The Conservation (Nature Habitats) Regulations (NI) 1995 (Schedule 2, 3 and 4);
The Conservation of Habitats and Species Regulations 2010 (Schedule 2, 4 and 5);
The Wildlife and Countryside Act 1981 (Schedule 1, 5 and 8);
Wildlife (NI) Order 1985 (Schedule 1 part 1, Schedule 1 part 2, Schedule 5, Schedule 8 part 1, Schedule 8 part 2).
Conservation evidence
Adapted from https://conservationevidence.com/
little-egret-sdm
Impact of climate change on little egret range in Britain
Updated reading list
Reading list for ARU Applied Animal Conservation MSc
Document
ARU course reading list
Data science and public health
Rapid review of Pubmed Central
Rapid literature review - use of CPRD and the THIN
UK studies based on UK primary EHR data bases (THIN and CPRD)
Rapid literature review - deep learning and public health
Outlines a method for searching, extracting and analysing research abstracts for given search term using a parameterised R markdown document
JSNA analysis
Scraping and analysing JSNAs
Keywords 20 topics ai_ml public health
Topic modelling of 38000 abstracts for AI/ML and public health
Scraping DPH reports from the web
Outlines a workflow for discovering, extracting and analysing Director of Public Health reports
Notes on falls
Work in progress. Deaths from falls in older people are increasing. This compares GBD estimates with ONS counts. Looks like a coding or step change in ONS around 2012. GBD gives higher estimates because it recodes deaths - smoother curve and higher estimates. Have embedded the GBD viz for falls deaths so can see the GBD model
Fingertips metadata
Interactive data table of fingertips metadata
K-means 3
Updated k-means analysis of GP dataset
Calendar heatmap of daily deaths
Calendar heat maps can show daily values of a variable in a calendar format i.e. by year by month by week by day.
rChart example
using analytics
Shiny app
Attempt for data products course
Experimental - SII
Code for calculating slope indices of inequality
SIIs for CCGs - experimental
Experimental plot of slope indices for CCGs based on GP practice profile data