gravatar

wjiang2

mike

Recently Published

remote gs
GatingSet -- remote archive
qc for panel
cytoqc for FlowCAP IV HIV
cytoqc for SDY 820
cytoqc- lyoplate DC panel
cytoqc 2
cytoqc
qc keyword
Document
openCyto Vignette extra
cytoqc
cytobank ACS to GatingSet
Document
add_pop
refGate_quadGate
User reported issues with RefGate populations switched in OpenCyto 1.20 see https://support.bioconductor.org/p/116264/ But I didn't see the same problem as this example demonstrated
mbenchmark
draw gate with openCyto
tiledbArray
reconstruct biexp for diva
H5 vs HSDS
increased sample size to enable distributed storage in DNs
H5 vs HSDS
hybrid format for single cell
H5 chunked zlib vs lz4
H5 chunked vs sql blobs
Publish Document
sparseMat_sql_h5
Document
benchmark 2d mat vs CSC
single cell hdf5 benchmark
NPflow whole dataset
NPflow
geom_tsne
Publish Document
ggcyto+tsne
Publish Document
Exaustive Autogating
flowClust-multiGates
Top features of ggcyto
quadGate.tmix
quadGate.tmix
ggcyto2plotly
try to render ggcyto plot with plotly
swap two nodes when plot the gating tree
swap two nodes when plot the gating tree
Publish Document
GatingML to GatingSet
lymphGate & write.flowSet
Publish Document
lymphGate
ggplot.flowSet.overlay
ggplot.flowSet.2d
ggplot.flowSet.1d
ggcyto.flowSet
ggcyto.GatingSet
histogram_flowViz
Add histogram support to flowViz
cytof_negative_peak
Investigate the unkown population by using `overlay` with `plotGate` within `openCyto` framework
cytof_vs_flow_trans_continue
New way of estimate `w` parameter of logicle for CyTOF
cytof_vs_flow_trans
adjust linearization for estimated logicle on CyTOF data
cytof_trans_manual
openCyto gating on cyTOF data
parseWorkspace-demo2
handle older version of windows flowJo workspace
report
parseWorkspace-demo
flowMap_test
mapping manually gated populations
normalization_demo
autoClusteringGating
How to merge GatingSets
How to plot gated data
vignette for flowWorkspace::plotGate